In short: You build your gut flora with lots of variety on your plate: fibre, prebiotic foods like oats, onions and leeks, and fermented products like sauerkraut, yoghurt or kefir. Less sugar and alcohol, exercise, sleep and stress relief help too. After antibiotics, the gut usually recovers within weeks to a few months, and you can support that with your diet. As of: October 2026.
The gut flora (gut microbiome) is made up of trillions of bacteria and other microorganisms that live mainly in the large intestine. It helps with digestion, works together with the immune system and even plays a part in your mood. Here you'll find out how to build it up in a healthy way, including after taking antibiotics.
Gut flora: what is it, actually?
The gut flora, also known as the gut microbiome or intestinal microbiota, refers to all the microorganisms that live in our gut. This microbial community consists of a wide variety of bacteria, viruses, fungi and other microbes that live in a complex, symbiotic relationship with each other.
The gut flora mainly colonises the large intestine, where it performs a wide range of functions. It plays an important role in digesting food, absorbing nutrients and producing vitamins. It also helps strengthen the immune system by fighting harmful microorganisms and regulating inflammation.
The composition of the gut flora is highly individual and can vary from person to person. It is already influenced at birth and keeps developing throughout life. Factors such as diet, environment, taking medication (especially antibiotics) and general state of health can affect the gut flora.
A good gut flora is important for our health and wellbeing. An unbalanced gut flora, also known as dysbiosis, can be linked to various health issues. These include digestive complaints such as irritable bowel syndrome, inflammatory bowel conditions, metabolic issues, allergic reactions, mood changes and even excess weight.
Our understanding of the gut flora and its importance for health has grown considerably in recent years. Researchers are intensively studying the links between the composition of the gut flora and various health conditions in order to develop new approaches to diagnosis and prevention.
By deliberately supporting our gut flora and encouraging a healthy composition, we can have a positive influence on our overall health. This includes measures such as a balanced diet, avoiding excessive use of antibiotics, taking probiotic food supplements and reducing stress factors.
Rebuilding your gut flora after antibiotics: what really helps?
Antibiotics don't only work against pathogens, but also against many beneficial gut bacteria. In healthy adults, the gut flora usually recovers within weeks to a few months, although some bacterial species take longer. You can support this process with your diet:
- Fibre and prebiotics: Oats, onions, leeks, garlic, chicory, bananas and pulses feed the bacteria that are good for you.
- Fermented foods: Sauerkraut, kimchi, natural yoghurt and kefir provide live cultures.
- Variety: The more colourful your choice of plant-based foods, the more diverse your gut flora. As a rule of thumb, aim for around 30 different plant-based foods per week.
- Less sugar and alcohol: Both encourage unwanted germs.
The evidence on probiotics after a course of antibiotics is not clear-cut. They are not a must for everyone. It's best to ask your doctor or pharmacist whether and which product makes sense for you. You'll find more details in our articles on restoring your gut after antibiotics and on probiotics and prebiotics.
How long does it take to rebuild the gut flora?
That's individual. After antibiotic therapy, the gut flora often normalises within a few weeks, while full diversity can take a few months. If you keep eating a high-fibre diet, you hold on to the result in the long run. If diarrhoea, stomach pain or bloating last longer, or if there is blood in your stool, please get it checked by a doctor.
Which foods rebuild the gut flora?
Combinations work best: an oat breakfast with banana and nuts, vegetables with pulses at lunch, plus sauerkraut or yoghurt. You'll find everyday ideas in our gut-friendly recipes and in the article on supporting your gut microbiome in everyday life. If you want to give your gut a break, a juice cleanse or the frank. gut cleanse is a good fit.

Why is it important to build up your gut flora?
It is important to build a good gut flora, as it plays a key role in our health and wellbeing.
Digestion and nutrient absorption
The gut flora plays an essential role in digesting food and absorbing nutrients. Certain types of bacteria help break down fibre and other indigestible substances, which releases important nutrients that the body can absorb.
Immune system
A healthy gut flora supports the immune system by maintaining the balance between harmful and beneficial microorganisms in the gut. Good bacteria compete with potentially harmful bacteria for nutrients and living space, which lowers the risk of infections and inflammation. A well-functioning immune system is important for defending against pathogens.
Inflammation control
An unbalanced gut flora can lead to increased inflammatory activity in the body. Chronic inflammation is linked to various health conditions. A healthy gut flora may help keep inflammation in check as part of an overall healthy lifestyle.
Metabolism and weight
Studies have shown that the composition of the gut flora is linked to metabolic processes and body weight. An unbalanced gut flora can affect metabolism and may play a role in metabolic issues and excess weight.
Mental wellbeing
There is a growing awareness of the connection between the gut flora and mental wellbeing. The gut is often called the "second brain", as it produces a large number of neurotransmitters and communicates with the brain via the so-called gut-brain axis. An unbalanced gut flora has been linked to mood changes.
By deliberately building up and looking after our gut flora, we can gain the benefits for our health mentioned above. A balanced diet with high-fibre foods, the use of probiotics and prebiotics and avoiding factors that have a negative effect on the gut flora all help to maintain a good gut flora.

Causes of an unbalanced gut
An unbalanced gut, also known as dysbiosis, can be caused by various factors.
Antibiotic use
Taking antibiotics can have a strong effect on your gut flora. Antibiotics don't only fight disease-causing bacteria, they also kill many beneficial bacteria. This can lead to an imbalance in the gut flora and encourage the growth of harmful microorganisms.
Unhealthy diet
A diet that is low in fibre and rich in sugary, fatty and processed foods can promote the growth of unwanted bacteria in the gut. An unbalanced diet can also change the composition of the gut flora and lead to dysbiosis.
Stress
Chronic stress can have a negative effect on gut health. It can slow down bowel movements, reduce blood flow to the gut and throw the gut flora out of balance. This can lead to digestive problems, inflammation and a weakened immune system.
Infections
Severe gastrointestinal infections or parasitic infections can disturb the gut flora and lead to dysbiosis. These infections can change the number and diversity of microorganisms in the gut and upset the balance between good and harmful bacteria.
Medication
Besides antibiotics, other medications can also affect the gut flora. These include certain painkillers, acid blockers, laxatives and certain treatments such as chemotherapy. These medications can change the composition of the gut flora and increase the risk of dysbiosis.
Environmental factors
Certain environmental factors such as polluted water, toxins, pesticides and heavy metals can affect the gut flora and lead to poorer gut health.
It is important to note that these factors do not necessarily cause dysbiosis, but they can increase the risk. How your gut reacts to these factors can differ from person to person. A healthy diet, stress management, the responsible use of medication and a healthy environment can help protect your gut flora and prevent poorer gut health.

Ways to build up your gut flora
There are various measures that can help you build a good gut flora.
Diet
A balanced diet that is rich in fibre promotes the growth and diversity of the good bacteria in your gut. Fibre is found in fruit, vegetables, wholegrain products, pulses and nuts. It serves as a food source for beneficial bacteria and helps you build a good gut flora.
Including a wide range of plant-based foods in your diet is another important point. Every food has a unique mix of fibre and nutrients that can support the growth of different bacterial strains in the gut.
Avoid excessive consumption of sugary drinks, sweets, junk food and heavily processed foods. These can encourage the growth of harmful bacteria in the gut and lead to dysbiosis.
Include healthy fats such as avocados, nuts, seeds and extra virgin olive oil in your diet. They provide important nutrients and support the control of inflammation in the gut.
Drinking enough water to stay well hydrated is essential. Water is important for proper digestion and for transporting nutrients in the gut.
Probiotics and prebiotics
Probiotics are live microorganisms that are taken on purpose to improve the gut flora. They are available as food supplements and as certain probiotic foods. Probiotics may help restore the balance of the gut flora, especially after antibiotic treatment or when the gut flora is out of balance.
Prebiotics are special fibres that serve as food for beneficial gut bacteria. They are found in many plant-based foods such as chicory, artichokes, onions, garlic and oats. By eating prebiotic foods, we can promote the growth and activity of the good bacteria.
Stress management
Stress can have a negative effect on gut health. Stress management techniques such as meditation, yoga, regular physical activity and enough sleep can help protect your gut flora.
There is a close connection between the gut and the brain, known as the gut-brain axis. The gut and the brain communicate with each other via nerve connections, hormones and inflammatory responses. Stress can affect this communication and lead to an imbalance of the gut flora.
Stress can directly affect how digestion works. In stressful situations, the body can switch into "fight or flight mode", which reduces blood flow to the gut and slows down digestion. This can lead to digestive complaints such as bloating, constipation and diarrhoea, and upset the balance of the gut flora.
Chronic stress can lead to increased inflammatory activity in the body, including in the gut. Inflammation can disturb the balance of the gut flora and contribute to dysbiosis.
Stress can affect the immune system, including the immune system in the gut. A weakened immune system in the gut can encourage the growth of harmful bacteria and increase the risk of infections and inflammation.
That is why effective stress management is important to keep your gut flora healthy. Stress coping strategies such as regular physical activity, relaxation techniques like meditation or yoga, enough sleep and a healthy lifestyle can all help reduce stress and support a healthy gut flora.
Avoiding harmful substances
Consuming alcohol, smoking and too much sugar can affect the gut flora. It is advisable to reduce or avoid these substances so you can build a good gut flora.
Antibiotics should only be taken when needed and under medical supervision. If antibiotics are necessary, it is also worth taking probiotic supplements where possible to support the balance of the gut flora.
Exercise
Regular physical activity can help build a healthy gut flora and promote overall gut health. Here are a few guidelines on how to move to support your gut flora:
Aerobic activities such as walking, running, swimming, cycling or dancing can get your bowel movements and metabolism going. This can support digestion and improve blood flow in the digestive tract, which may contribute to a healthier gut flora.
Interval training, where intense phases of activity alternate with recovery phases, can also be beneficial. Intense workouts have been shown to be able to increase the diversity and number of beneficial bacteria in the gut.
Regular training with weights or other resistance methods can not only improve muscle strength and health, but also promote gut health. Strength training can help improve insulin sensitivity, regulate digestion and reduce the general inflammatory response in the body.
Exercise can have a positive effect on stress relief. Stress can have a negative effect on gut health, so it is important to choose activities that you enjoy and that help you let go of stress. Yoga, Pilates, Tai Chi or meditation can be especially effective for reducing stress and improving the wellbeing of your gut.
It is important to be active regularly and to build a routine. Try to plan in at least 150 minutes of moderate to intense physical activity per week. This way, your gut flora is supported continuously and the health of your digestive system is promoted.

Doing a gut cleanse
Gut cleanses are measures or programmes that aim to improve the health of your gut flora and to cleanse the gut. There are different kinds of gut cleanses, each with a different approach.
A bowel cleanse, often also called a gut detox or colon cleansing, involves using special products, such as laxatives or enemas, to clear the gut of deposits, toxins and possibly harmful substances. It is believed that this improves gut health and restores the balance of the gut flora.
Probiotics are live microorganisms that are taken on purpose to improve the gut flora. Probiotics can be taken in the form of food supplements or probiotic foods such as yoghurt or kefir. They are meant to support the balance of the gut flora by introducing good bacteria or encouraging the growth of the good bacteria already there.
Prebiotics are special fibres that serve as food for the good bacteria in your gut. They promote the growth and activity of beneficial bacteria and can be taken in by eating certain foods or food supplements.
A targeted change of diet can be part of a gut cleanse. Certain foods that may have a negative effect on gut health might be reduced or avoided, while foods rich in fibre, probiotics and prebiotics are eaten more.
The gut cleanse by frank.
The frank. gut cleanse combines some of these features. Choose between the 3, 5 or 7 day gut cleanse from frank. and combine one of our classic juice cleanses with food supplements from our partner BIOGENA and an organic tea from frank.. With the extra products, the juice cleanse is perfectly tuned to your gut, so that it supports your gut restoration and does you and your gut a lot of good.
Your frank. gut cleanse includes:
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a frank. juice cleanse in the length and intensity of your choice
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the food supplement CleanoCOL by BIOGENA
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the food supplement Omni Lactis 20 Gold by BIOGENA
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the frank. tea "Happy Stomach"
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the digital gut cleanse guide with comprehensive information about your gut cleanse and the topic of gut health
Frequently asked questions about rebuilding the gut flora
How can I rebuild my gut flora after antibiotics?
Go for a high-fibre, plant-based diet, fermented foods such as yoghurt, kefir or sauerkraut, and largely cut out sugar and alcohol. Whether a probiotic makes sense is best discussed with a doctor or pharmacist.
How long does it take to rebuild the gut flora?
The gut flora often recovers within weeks, while full diversity can take a few months. A lasting high-fibre diet is what counts.
Which foods are good for the gut flora?
Oats, onions, leeks, garlic, chicory, bananas, pulses, wholegrain foods and fermented foods such as sauerkraut, natural yoghurt and kefir.
Are probiotics necessary to rebuild the gut flora?
Not for everyone. A varied, high-fibre diet is the foundation. Probiotics can make sense in certain situations, but the evidence is mixed.





















































